OAIHarvest Admin Guide¶

2.1 OAI Harvest Admin Interface¶

Add OAI sources

The first step requires the administrator to enter the baseURL of the OAI repository. This is done for validation purposes - i.e. to check that the baseURL actually points to an OAI-compliant repository. (Note: the validation simply performs an ‘Identify’ query to the baseURL and parses the reply with crucial tags such as OAI-PMH and Identify).

Once the baseURL is validated, the administrator is required to fill into the following fields:

• Source name: this will be the (alphanumeric) name used to refer to this OAI repository.

• Metadata prefix: upon validation the baseURL is checked for the available metadata formats. The administator can choose the desired format to harvest metadata in.

• Sets: upon validation the baseURL is checked for the available sets of the repository. The administator can choose the desired sets to harvest. If none is checked, all records are harvested. Otherwise selective harvesting for checked sets is done.

• Frequency: how often do you intend to harvest from this repository? (Note: selecting “never” excludes this source from automatic periodical harvesting)

• Starting date: on your first harvesting session, do you intend to harvest the whole repository (from beginning) or only newly added material (from today)? (WARNING: harvesting large collections of material may take very long!)

• Postprocess: how is the harvested material be dealt with after harvesting? You can choose among several action to be taken after harvesting records:

  • c: convert - harvested metadata will be converted (given BibConvert config file) and saved locally - this is useful when harvested metadata is in a format different from marcxml (e.g. oai_dc)
  • r: extract references - attempt to download full-text pdf for each record and run refextract to add references to resulting MARCXML
  • p: extract plots - attempt to download material (like tarballs) for each record and extract plots (only from LaTeX sources) to attach with FFT to resulting MARXML
  • t: attach full-text - attempt to download full-text for each record and add it as FFT upload in resulting MARCXML
  • f: filter - useful when you want to filter harvested data in some non-trivial way before uploading
  • u: upload - metadata will be automatically queued for upload (this is useful when harvested metadata is already in marcxml format)

  Note: Select none of the above to only harvest records

• BibConvert configuration file: if postprocess involves conversion, the filename of an existing BibConvert configuration file (or its full path if file is not in standard BibConvert config directory) is needed. This file determines how the metadata conversion will take place (e.g. oai_dc to marcxml). In order to ensure that the configuration file performs the desired conversion, please test it in advance and follow the instruction contained in the BibConvert Admin Guide. Please note that some conversion parameters previously input at the command line can now be handled by the BibConvert Configuration Language (namely record separator, file header and file footer). Please consult the BibConvert Admin Guide for more information on this. This allows fully automatised harvesting and conversion (and possibly upload) of records provided a valid, functioning, BibConvert template is provided.

• BibFilter program file: if postprocess involves filtering, the full path of an existing BibFilter script is needed. This file determines how the harvested records should be filtered. It should produce 4 different MARXML outputs:

  • *.insert.xml: full records will be uploaded with “-i” parameter, new record
  • *.append.xml: record snippets will be uploaded with “-a” parameter, record additions
  • *.correct.xml: record snippets will be uploaded with “-c” parameter, record corrections
  • *.holdingpen.xml: full records will be uploaded with “-o” parameter, to Holding Pen

  Please refer to BibUpload Admin Guide for more information in BibUpload parameters. In order to ensure that the program performs the desired actions, please test it in advance.

Edit and delete OAI sources

Once a source has been added to the database, it will be visible in the overview page, as shown below

At this point it will be possible to edit the definition of this source by clicking on the appropriate action button. All the fields described in 2.2.1 can be modified (except for the Starting date). There is no more validation at this stage, hence, please take extra care when editing important fields such as baseurl and metadataprefix.

OAI repositories can be removed from the database by clicking on the appropriate action button in the overview page.

Testing OAI sources

This interface provides the possibility to test OAI harvesting settings. In order to see the harvesting and postprocessing results, administrator has to provide record identifier (insige the harvested OAI source) and click “test” button. After doing this, two new frames will appear. The upper contatins original OAI XML harvested from the source. The second contains the result of all the postprocessing activities or an error message.

Viewing the harvesting history

This page allows the administrator to see which records have been recently harvested. All the data is shown in database insertion order. If there was more than 10 inserted records during a day, only first 10 will be displayed. In order to do manipulations connected with the rest, the administrator has to proceed to day details page which is available by “View next entries...” link.

The same page provides the possibility of reharvesting the records present in the past. All have to be done in order to achieve this is selecting appropriate records by checking the checkboxes on the right side of the entry and clicking “reharvest selected records” button.

Harvesting particular records

This page provides the possibility of harvesting records manually. The administrator has to provide an internal OAI source identifier. After this, record will be harvested, converted and filtered according to the source settings and scheduled to be uploaded into the database.

2.2 oaiharvest commmand-line tool¶

Once administrators have set up their desired OAI repositories in the database through the Admin Interface they can invoke oaiharvest to start up periodical harvesting.

Oaiharvest usage

oaiharvest [options]

Manual single-shot harvesting mode:
  -o, --output         specify output file
  -v, --verb           OAI verb to be executed
  -m, --method         http method (default POST)
  -p, --metadataPrefix metadata format
  -i, --identifier     OAI identifier
  -s, --set            OAI set(s). Whitespace-separated list
  -r, --resuptionToken Resume previous harvest
  -f, --from           from date (datestamp)
  -u, --until          until date (datestamp)
  -c, --certificate    path to public certificate (in case of certificate-based harvesting)
  -k, --key            path to private key (in case of certificate-based harvesting)
  -l, --user           username (in case of password-protected harvesting)
  -w, --password       password (in case of password-protected harvesting)

Automatic periodical harvesting mode:
  -r, --repository="repo A"[,"repo B"]   which repositories to harvest (default=all)
  -d, --dates=yyyy-mm-dd:yyyy-mm-dd      reharvest given dates only

Scheduling options:
  -u, --user=USER   User name under which to submit this task.
  -t, --runtime=TIME    Time to execute the task. [default=now]
            Examples: +15s, 5m, 3h, 2002-10-27 13:57:26.
  -s, --sleeptime=SLEEP Sleeping frequency after which to repeat the task.
            Examples: 30m, 2h, 1d. [default=no]
  -L  --limit=LIMIT Time limit when it is allowed to execute the task.
            Examples: 22:00-03:00, Sunday 01:00-05:00.
            Syntax: [Wee[kday]] [hh[:mm][-hh[:mm]]].
  -P, --priority=PRI    Task priority (0=default, 1=higher, etc).
  -N, --name=NAME   Task specific name (advanced option).

General options:
  -h, --help        Print this help.
  -V, --version     Print version information.
  -v, --verbose=LEVEL   Verbose level (0=min, 1=default, 9=max).
      --profile=STATS   Print profile information. STATS is a comma-separated
            list of desired output stats (calls, cumulative,
            file, line, module, name, nfl, pcalls, stdname, time).

oaiharvest performs a number of operations on the repositories listed in the database. By default oaiharvest considers all repositories, one by one (this gets overridden when --repository argument is passed).

For each repository that is considered, oaiharvest behaves according to the arguments passed at the command line:

• If the --dates argument is not passed, it checks whether an update from the repository is needed (Note: the update status is calculated based on the time of the last harvesting and the frequency chosen by the administrator).
  • If an update is needed, it harvests all the metadata that the repository has added since the data of the last update. When the update is finished, the last update value is set to the current time and date.
  • If an update is not needed, the source is skipped.
• If the --dates argument is passed, it simply harvests the metadata of the repository from/until the given dates. The last update date is left unchanged.
• Finally, it performs the operations indicated in the postprocess mode, i.e. convert and/or upload the harvested metadata.

Oaiharvest usage examples

In most cases, administrators will want oaiharvest to run in the background, i.e. run in sleep mode and wake up periodically (e.g. every 24 hours) to check whether updates are needed:

$ oaiharvest -s 24h

In other cases, administrators may want to perform periodical harvesting only on specific sources:

$ oaiharvest -r cds -s 12h

Another option is that administrators may want to harvest from certain repositories within two specific dates. This will be regarded as a one-off operation and will not affect the last update value of the source:

$oaiharvest -r cds -d 2005-05-05:2005-05-30